P. Christoph Champ

Last updated March 10th 2010
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P. CHRISTOPH CHAMP

Seattle 98195 - USA

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EDUCATION 

Oregon State University, Corvallis, OR, September 2000 - June 2004

BS in Biochemistry and Biophysics

 

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RESEARCH 
  • System Administrator and Research Assistant: Dr. Ethan A. Merritt Laboratory, Medical Structural Genomics of Pathogenic Protozoa Consortium, Seattle, USA; October 2006-present.
  • System Administrator and Research Assistant: Dr. Carlos J. Camacho Laboratory, Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA, March 2006-February 2007.
  • Research Assistant: Dr. David W. Ussery Laboratory, Center for Biological Sequence Analysis, Danmarks Tekniske Universitet, Denmark, August 2005-November 2005.
  • Research Assistant: Dr. Carlos J. Camacho Laboratory, Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA, October 2004-July 2005.
  • Research Assistant: Dr. Alex Rich Laboratory, Dept. of Biology, Massachusetts Institute of Technology, USA, Summer 2002/December 2002.
  • Research Assistant: Dr. P. Shing Ho Laboratory, Dept. of Biochemistry & Biophysics, Oregon State University, USA, May 2000-September 2004.

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PUBLICATIONS 
  • P. Christoph Champ and Carlos J. Camacho (2007). FastContact: a free energy scoring tool for protein-protein complex structures. Nucleic Acids Research (Web Issue). DOI:10.1093/nar/gkm326
  • P. Christoph Champ, Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. Nucleic Acids Research, 32(22):6501-6510.
  • Carlos J. Camacho, Ma H, and P. Christoph Champ (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. Proteins, 63(4):868-77.
  • P. Christoph Champ, Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. Microbiology, 152(3):579-583.

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SKILLS 
  • Apache Webserver (Intermediate; Currently used / 6 years)
  • C programming language (Intermediate; Currently used / 10 years)
  • Fortran77 (Beginner; Currently used / 6 years)
  • Linux/Unix OS (Expert; Currently used / 11 years)
  • MySQL (Intermediate; Currently used / 8 years)
  • Perl (Expert; Currently used / 10 years)
  • PHP (Intermediate; Currently used / 6 years)
  • XHTML+CSS (Expert; Currently used / 6 years)

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AWARDS AND HONORS 
  • Oregon State University Honor's College (freshman and sophomore years)
  • National Dean's List (two consecutive years)
  • Phi Theta Kappa Honor Society

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